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1

The impact of probiotic supplementation during pregnancy on DNA methylation of obesity-related genes in mothers and their children

Vähämiko, Sanna, Laiho, Asta, Lund, Riikka, Isolauri, Erika, Salminen, Seppo, Laitinen, Kirsi

Journal:

European Journal of Nutrition

Year:

2018

Language:

english

File:

PDF, 901 KB

english, 2018

2

Gut Microbiota as an Epigenetic Regulator: Pilot Study Based on Whole-Genome Methylation Analysis

Kumar, Himanshu, Lund, Riikka, Laiho, Asta, Lundelin, Krista, Ley, Ruth E., Isolauri, Erika, Salminen, Seppo

Journal:

Year:

2014

Language:

english

File:

PDF, 684 KB

english, 2014

3

Kinetics and STAT4- or STAT6-mediated regulation of genes involved in lymphocyte polarization to Th1 and Th2 cells

Riikka J. Lund, Emmi K. Ylikoski, Tero Aittokallio, Olli Nevalainen, Riitta Lahesmaa

Journal:

European Journal of Immunology

Year:

2003

Language:

english

File:

PDF, 572 KB

english, 2003

4

IL-12 up-regulates T-bet independently of IFN-γ in human CD4+ T cells

Emmi Ylikoski, Riikka Lund, Minna Kyläniemi, Sanna Filén, Maritta Kilpeläinen, Johannes Savolainen, Riitta Lahesmaa

Journal:

European Journal of Immunology

Year:

2005

Language:

english

File:

PDF, 280 KB

english, 2005

5

Identification of genes involved in the initiation of human Th1 or Th2 cell commitment

Riikka Lund, Helena Ahlfors, Essi Kainonen, Anna-Maria Lahesmaa, Craig Dixon, Riitta Lahesmaa

Journal:

European Journal of Immunology

Year:

2005

Language:

english

File:

PDF, 645 KB

english, 2005

6

Correction: IL-12 up-regulates T-bet independently of IFN-γ in human CD4+ T cells

Emmi Ylikoski, Riikka Lund, Minna Kyläniemi, Sanna Filén, Maritta Kilpeläinen, Johannes Savolainen, Riitta Lahesmaa

Journal:

European Journal of Immunology

Year:

2006

Language:

english

File:

PDF, 80 KB

english, 2006

7

RNA-Binding Protein L1TD1 Interacts with LIN28 via RNA and is Required for Human Embryonic Stem Cell Self-Renewal and Cancer Cell Proliferation

Elisa Närvä, Nelly Rahkonen, Maheswara Reddy Emani, Riikka Lund, Juha-Pekka Pursiheimo, Juuso Nästi, Reija Autio, Omid Rasool, Konstantin Denessiouk, Harri Lähdesmäki, Anjana Rao, Riitta Lahesmaa

Journal:

Year:

2012

Language:

english

File:

PDF, 1.57 MB

english, 2012

8

Genome-wide Profiling of Interleukin-4 and STAT6 Transcription Factor Regulation of Human Th2 Cell Programming

Laura L. Elo, Henna Järvenpää, Soile Tuomela, Sunil Raghav, Helena Ahlfors, Kirsti Laurila, Bhawna Gupta, Riikka J. Lund, Johanna Tahvanainen, R. David Hawkins, Matej Orešič, Harri Lähdesmäki, Omid Ra

Journal:

Year:

2010

Language:

english

File:

PDF, 1.16 MB

english, 2010

9

Expression of human pim family genes is selectively up-regulated by cytokines promoting T helper type 1, but not T helper type 2, cell differentiation

Teija L. T. Aho, Riikka J. Lund, Emmi K. Ylikoski, Sampsa Matikainen, Riitta Lahesmaa, Päivi J. Koskinen

Journal:

Year:

2005

Language:

english

File:

PDF, 187 KB

english, 2005

10

Genetic and epigenetic stability of human pluripotent stem cells

Lund, Riikka J., Närvä, Elisa, Lahesmaa, Riitta

Journal:

Nature Reviews Genetics

Year:

2012

Language:

english

File:

PDF, 630 KB

english, 2012

11

IFN-α and IL-12 activate IFN regulatory factor 1 (IRF-1), IRF-4, and IRF-8 gene expression in human NK and T cells

Anne Lehtonen, Riikka Lund, Riitta Lahesmaa, Ilkka Julkunen, Timo Sareneva, Sampsa Matikainen

Journal:

Year:

2003

Language:

english

File:

PDF, 384 KB

english, 2003

12

High-throughput karyotyping of human pluripotent stem cells

Riikka J. Lund, Tuomas Nikula, Nelly Rahkonen, Elisa Närvä, Duncan Baker, Neil Harrison, Peter Andrews, Timo Otonkoski, Riitta Lahesmaa

Journal:

Stem Cell Research

Year:

2012

Language:

english

File:

PDF, 694 KB

english, 2012

13

Global Chromatin State Analysis Reveals Lineage-Specific Enhancers during the Initiation of Human T helper 1 and T helper 2 Cell Polarization

Hawkins, R. David, Larjo, Antti, Tripathi, Subhash K., Wagner, Ulrich, Luu, Ying, Lönnberg, Tapio, Raghav, Sunil K., Lee, Leonard K., Lund, Riikka, Ren, Bing, Lähdesmäki, Harri, Lahesmaa, Riitta

Journal:

Year:

2013

Language:

english

File:

PDF, 3.79 MB

english, 2013

14

Karyotypically abnormal human ESCs are sensitive to HDAC inhibitors and show altered regulation of genes linked to cancers and neurological diseases

Lund, Riikka J., Emani, Maheswara Reddy, Barbaric, Ivana, Kivinen, Virpi, Jones, Mark, Baker, Duncan, Gokhale, Paul, Nykter, Matti, Lahesmaa, Riitta, Andrews, Peter W.

Journal:

Stem Cell Research

Year:

2013

Language:

english

File:

PDF, 2.28 MB

english, 2013

15

ESTOOLS Data@Hand: human stem cell gene expression resource

Kong, Lingjia, Aho, Kaisa-Leena, Granberg, Kirsi, Lund, Riikka, Järvenpää, Laura, Seppälä, Janne, Gokhale, Paul, Leinonen, Kalle, Hahne, Lauri, Mäkelä, Jarno, Laurila, Kirsti, Pukkila, Heidi, Närvä, E

Journal:

Year:

2013

Language:

english

File:

PDF, 224 KB

english, 2013

16

Improving Identification of Differentially Expressed Genes by Integrative Analysis of Affymetrix and Illumina Arrays

Elo, Laura L., Katajamaa, Mikko, Lund, Riikka, OrešIč, Matej, Lahesmaa, Riitta, Aittokallio, Tero

Journal:

Omics A Journal of Integrative Biology

Year:

2006

Language:

english

File:

PDF, 928 KB

english, 2006

17

Expression profiles of long non-coding RNAs located in autoimmune disease-associated regions reveal immune cell-type specificity

Hrdlickova, Barbara, Kumar, Vinod, Kanduri, Kartiek, Zhernakova, Daria V, Tripathi, Subhash, Karjalainen, Juha, Lund, Riikka J, Li, Yang, Ullah, Ubaid, Modderman, Rutger, Abdulahad, Wayel, Lähdesmäki,

Journal:

Genome Medicine

Year:

2014

Language:

english

File:

PDF, 1.72 MB

english, 2014

18

A Novel Feeder-Free Culture System for Human Pluripotent Stem Cell Culture and Induced Pluripotent Stem Cell Derivation

Vuoristo, Sanna, Toivonen, Sanna, Weltner, Jere, Mikkola, Milla, Ustinov, Jarkko, Trokovic, Ras, Palgi, Jaan, Lund, Riikka, Tuuri, Timo, Otonkoski, Timo, Shioda, Toshi

Journal:

Year:

2013

Language:

english

File:

PDF, 3.85 MB

english, 2013

19

Identification of global regulators of T-helper cell lineage specification

Kanduri, Kartiek, Tripathi, Subhash, Larjo, Antti, Mannerström, Henrik, Ullah, Ubaid, Lund, Riikka, Hawkins, R. David, Ren, Bing, Lähdesmäki, Harri, Lahesmaa, Riitta

Journal:

Genome Medicine

Year:

2015

Language:

english

File:

PDF, 1.85 MB

english, 2015

20

Mature Let-7 miRNAs fine tune expression of LIN28B in pluripotent human embryonic stem cells

Rahkonen, Nelly, Stubb, Aki, Malonzo, Maia, Edelman, Sanna, Emani, Maheswara Reddy, Närvä, Elisa, Lähdesmäki, Harri, Ruohola-Baker, Hannele, Lahesmaa, Riitta, Lund, Riikka

Journal:

Stem Cell Research

Year:

2016

Language:

english

File:

PDF, 777 KB

english, 2016

21

RNA Polymerase III Subunit POLR3G Regulates Specific Subsets of PolyA + and SmallRNA Transcriptomes and Splicing in Human Pluripotent Stem Cells

Lund, Riikka J., Rahkonen, Nelly, Malonzo, Maia, Kauko, Leni, Emani, Maheswara Reddy, Kivinen, Virpi, Närvä, Elisa, Kemppainen, Esko, Laiho, Asta, Skottman, Heli, Hovatta, Outi, Rasool, Omid, Nykter,

Journal:

Stem Cell Reports

Year:

2017

Language:

english

File:

PDF, 1.84 MB

english, 2017

22

The L1TD1 Protein Interactome Reveals the Importance of Post-transcriptional Regulation in Human Pluripotency

Emani, Maheswara Reddy, Närvä, Elisa, Stubb, Aki, Chakroborty, Deepankar, Viitala, Miro, Rokka, Anne, Rahkonen, Nelly, Moulder, Robert, Denessiouk, Konstantin, Trokovic, Ras, Lund, Riikka, Elo, Laura

Journal:

Stem Cell Reports

Year:

2015

Language:

english

File:

PDF, 2.93 MB

english, 2015

23

Epigenomic Landscapes of hESC-Derived Neural Rosettes: Modeling Neural Tube Formation and Diseases

Valensisi, Cristina, Andrus, Colin, Buckberry, Sam, Doni Jayavelu, Naresh, Lund, Riikka J., Lister, Ryan, Hawkins, R. David

Journal:

Year:

2017

Language:

english

File:

PDF, 4.63 MB

english, 2017

24

Methylome Analysis of Human Bone Marrow MSCs Reveals Extensive Age- and Culture-Induced Changes at Distal Regulatory Elements

Pasumarthy, Kalyan K., Doni Jayavelu, Naresh, Kilpinen, Lotta, Andrus, Colin, Battle, Stephanie L., Korhonen, Matti, Lehenkari, Petri, Lund, Riikka, Laitinen, Saara, Hawkins, R. David

Journal:

Stem Cell Reports

Year:

2017

Language:

english

File:

PDF, 4.45 MB

english, 2017

25

Atopic asthma after rhinovirus induced wheezing is associated with DNA methylation change in the SMAD3 gene promoter

Lund, Riikka J, Osmala, Maria, Malonzo, Maia, Lukkarinen, Minna, Leino, Annamari, Salmi, Jussi, Vuorikoski, Sanna, Turunen, Riitta, Vuorinen, Tytti, Akdis, Cezmi, Lähdesmäki, Harri, Lahesmaa, Riitta,

Journal:

Year:

2018

Language:

english

File:

PDF, 574 KB

english, 2018

26

Lack of Decorin Expression by Human Bladder Cancer Cells Offers New Tools in the Therapy of Urothelial Malignancies

Sainio, Annele, Nyman, Marie, Lund, Riikka, Vuorikoski, Sanna, Boström, Pia, Laato, Matti, Boström, Peter J., Järveläinen, Hannu, St-Pierre, Yves

Journal:

Year:

2013

Language:

english

File:

PDF, 1.14 MB

english, 2013

27

Predictability of leaf morphological traits for palaeoecological reconstruction: the case of leaf cuticle and leaf dry mass per area

Veromann-Jürgenson, Linda-Liisa, Brodribb, Timothy, Laanisto, Lauri, Bruun-Lund, Sam, Niinemets, Ülo, Nuño, Samuel Liga, Rinnan, Riikka, Puglielli, Giacomo, Tosens, Tiina

Journal:

International Journal of Plant Sciences

Year:

2019

Language:

english

File:

PDF, 2.46 MB

english, 2019

28

Predictability of leaf morphological traits for palaeoecological reconstruction: the case of leaf cuticle and leaf dry mass per area

Veromann-Jürgenson, Linda-Liisa, Brodribb, Timothy, Laanisto, Lauri, Bruun-Lund, Sam, Niinemets, Ülo, Nuño, Samuel Liga, Rinnan, Riikka, Puglielli, Giacomo, Tosens, Tiina

Journal:

International Journal of Plant Sciences

Year:

2019

File:

PDF, 2.46 MB

2019

29

Analysis of H3K4me3 and H3K27me3 bivalent promotors in HER2+ breast cancer cell lines reveals variations depending on estrogen receptor status and significantly correlates with gene expression

Kaukonen, Damien, Kaukonen, Riina, Polit, LÃ©lia, Hennessy, Bryan T., Lund, Riikka, Madden, Stephen F.

Journal:

BMC Medical Genomics

Year:

2020

File:

PDF, 1.48 MB

2020

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